This helps to identify genes in which (a) an unbalanced fusion or other structural rearrangement breakpoint occured, or (b) CNV calling is simply difficult due to an inconsistent copy number signal.
The threshold () options are used to control which genes are reported.
If a large-scale CNA covers multiple genes, each of those genes will be listed individually.
If segments are not given, the median of the log2 ratio values of the bins within each gene will be reported as the gene’s overall log2 ratio value.
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